MmuALTD0012584-2/2 @ mm9

Alternative 5'ss

Gene

ENSMUSG00000027200 | Sema6d

Description

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:MGI Symbol;Acc:MGI:2387661]

Coordinates

chr2:124487940-124493505:+

Coord C1 exon

chr2:124487940-124488095

Coord A exon

chr2:124488096-124488107

Coord C2 exon

chr2:124489757-124493505

Length

12 bp

Sequences

Splice sites

5' ss Seq

AGGGTAAGG

5' ss Score

9.16

3' ss Seq

CCTTCCCGTGTCTGTTGCAGGTG

3' ss Score

13.06

Exon sequences

Seq C1 exon

ACATGGAGGTATCCTCATCTTCTGTTACCACTGTGGCAAGTAGCCCAGAAATTACATCTAAAGTGATTGATACCTGGAGACCTAAACTGACGAGCTCCCGGAAATTTGTAGTTCAAGATGACCCAAATACTTCTGATTTTACTGATACTATATCAG

Seq A exon

GTATCCCAAAGG

Seq C2 exon

GTGTACGGTGGGAAGTCCAGTCTGGAGAATCCAATCAGATGGTCCACATGAATGTCCTCATCACCTGCGTGTTTGCCGCTTTTGTCTTGGGCGCGTTCATCGCAGGAGTGGCCGTGTACTGCTACCGTGACATGTTCGTTCGGAAGAACAGAAAGATCCATAAAGACGCAGAATCCGCCCAGTCGTGCACAGACTCCAGCGGAAGCTTCGCCAAGCTGAACGGCCTCTTTGACAGCCCCGTCAAGGAATACCAGCAGAACATTGATTCTCCCAAACTCTACAGCAACCTGCTGACCAGTCGGAAGGAACTGCCACCAAACACGGATACAAAGTCCATGGCCGTGGACCACAGAGGCCAGCCTCCCGAGCTGGCTGCTCTCCCCACGCCGGAATCCACACCTGTCCTCCACCAGAAGACCCTGCAGGCCATGAAGAGCCACTCTGAGAAGGCCCACAGCCACGGTGCTTCAAGGAAAGAACACCCCCAGTTTTTTCCTTCT

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000027200-27-35,28-35-2/2

Average complexity

Alt5

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (Ref)

No structure available

Features