HsaALTD1018859-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000130779 | CLIP1
Description
CAP-Gly domain containing linker protein 1 [Source:HGNC Symbol;Acc:HGNC:10461]
Coordinates
chr12:122336632-122340847:-
Coord C1 exon
chr12:122340758-122340847
Coord A exon
chr12:122340753-122340757
Coord C2 exon
chr12:122336632-122336748
Length
5 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
CATGTAACACTGTGTGTTAGGCT
3' ss Score
4.28
Exon sequences
Seq C1 exon
GTAAATCGGAAATGAAGAAACTTAGACAGCAGCTTGAGGCAGCTGAGAAACAGATTAAACATTTAGAGATTGAAAAGAATGCTGAAAGTA
Seq A exon
GCAAG
Seq C2 exon
GCTAGTAGCATTACCAGAGAGCTCCAGGGGAGAGAGCTAAAGCTTACTAACCTTCAGGAAAATTTGAGTGAAGTCAGTCAAGTGAAAGAGACTTTGGAAAAAGAACTTCAGATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130779-63-55,64-55-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=NA C2=0.173
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTGAGGCAGCTGAGAAAC
R:
GCTTTAGCTCTCTCCCCTGGA
Band lengths:
103-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains