HsaEX0000243 @ hg38
Exon Skipping
Gene
ENSG00000154263 | ABCA10
Description
ATP binding cassette subfamily A member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr17:69193493-69194495:-
Coord C1 exon
chr17:69194385-69194495
Coord A exon
chr17:69193814-69193989
Coord C2 exon
chr17:69193493-69193612
Length
176 bp
Sequences
Splice sites
3' ss Seq
TTTTAAATTTCTATTTATAGGAT
3' ss Score
9.91
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
GCATATTTTTTGACATATATGAAGGACAGATCACTGCAATACTTGGGCATAATGGAGCTGGTAAATCAACACTGCTAAACATTCTTAGTGGATTGTCTGTTTCTACAGAAG
Seq A exon
GATCAGCCACTATTTATAATACTCAACTCTCTGAAATAACTGACATGGAAGAAATTAGAAAGAATATTGGATTTTGTCCACAGTTCAATTTTCAATTTGACTTCCTCACTGTGAGAGAAAACCTCAGGGTATTTGCTAAAATAAAAGGGATTCAGCCAAAGGAAGTGGAACAAGAG
Seq C2 exon
GTAAAAAGAATTATAATGGAATTAGACATGCAAAGCATTCAAGACATTATTGCTAAAAAATTAAGTGGTGGGCAGAAGAGAAAACTAACACTAGGGATTGCCATCTTAGGAGATCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263_MULTIEX4-5/10=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(25.2=100)
A:
PF0000522=ABC_tran=FE(39.5=100)
C2:
PF0000522=ABC_tran=FE(26.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATATATGAAGGACAGATCACTGCA
R:
CTGAGGATCTCCTAAGATGGCA
Band lengths:
219-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development