MmuEX6090815 @ mm10
Exon Skipping
Gene
ENSMUSG00000041828 | Abca8a
Description
ATP-binding cassette, sub-family A (ABC1), member 8a [Source:MGI Symbol;Acc:MGI:2386846]
Coordinates
chr11:110069789-110071530:-
Coord C1 exon
chr11:110071420-110071530
Coord A exon
chr11:110070313-110070488
Coord C2 exon
chr11:110069789-110069908
Length
176 bp
Sequences
Splice sites
3' ss Seq
TTTGAAACCCTTATTTATAGGTT
3' ss Score
5.13
5' ss Seq
GAGGTACAA
5' ss Score
5.13
Exon sequences
Seq C1 exon
ATCTGACACTGGATGTATATAAAGGCCAGATTACTGCGATCCTTGGTCACAGTGGAGCTGGGAAATCAACACTGTTAAATGTCCTGAGTGGGTTGTGTGTTCCCACCAAAG
Seq A exon
GTTGGGTCACTATCCATAATAACAAACTCTCAGAAATGACTGACTTGGAAAATATCAGCAAGCTCACTGGAGTTTGTCCACAATGCAATGTGCAATTTGACTTCCTCACTGTAAGAGAAAATCTTAGGCTATTTGCTAAAATAAAAGGGATTCAAGCCCACGAAGTGGATAACGAG
Seq C2 exon
GTACAAAGAGTTTTGCTGGAATTGGACATGAAAAATACTCAGAATATTCTTGTTCAAAACCTAAGCGGCGGACAGAAGAGAAAGCTGACGTTTGGAATCGCCATTTTAGGAGACCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041828_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(25.2=100)
A:
PF0000522=ABC_tran=FE(39.5=100)
C2:
PF0000522=ABC_tran=FE(26.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACTGGATGTATATAAAGGCCA
R:
TGAGGGTCTCCTAAAATGGCGA
Band lengths:
227-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types