RnoEX0004963 @ rn6
Exon Skipping
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98364235-98366831:-
Coord C1 exon
chr10:98366721-98366831
Coord A exon
chr10:98365677-98365846
Coord C2 exon
chr10:98364235-98364325
Length
170 bp
Sequences
Splice sites
3' ss Seq
TTTAAAACCATTATTTATAGGTT
3' ss Score
5.2
5' ss Seq
GAGGTACAT
5' ss Score
6.75
Exon sequences
Seq C1 exon
ATTTGACATTGGATGTATATAAAGGCCAGATTACTGCAATCCTTGGTCACAGTGGAGCTGGGAAATCAACGCTATTAAATGTCCTTAGTGGACTGTGTGTTCCCACCAAAG
Seq A exon
GTTGGGTCACTATCCATGATAACAAACTCTCAGAAATGACTGACTTGGAAAGCATCAGCAAGCTCACTGGAGTTTGTCCGCAGTGCAATGTACAATTTGACTTCCTCACTGTAAGAGAAAATCTTAGGCTTTTTGCTAAAATAAAAGGGATTCAAGAAGTGGATAATGAG
Seq C2 exon
ATAGGAAAGTGTTCATCTCCCAGGGGAAGCTGAGGTGTGCAGGATCTTCCTTGTTTCTGAAGAAAAAATGGGGGATTGGTTATCACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147_MULTIEX1-12/37=11-15
Average complexity
C3*
Mappability confidence:
91%=92=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(25.5=100)
A:
PF0000522=ABC_tran=FE(38.6=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATTGGATGTATATAAAGGCCA
R:
AGTGATAACCAATCCCCCATTT
Band lengths:
195-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]