BtaEX6091124 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:61973409-61974383:+
Coord C1 exon
chr19:61973409-61973525
Coord A exon
chr19:61973888-61974063
Coord C2 exon
chr19:61974264-61974383
Length
176 bp
Sequences
Splice sites
3' ss Seq
TTACATTTTTTTATCCATAGGAT
3' ss Score
11.1
5' ss Seq
GAGGTAGAT
5' ss Score
6.04
Exon sequences
Seq C1 exon
AAACAGGCATATGTCTTGACGTCTATGAAGGCCAGCTCACGGCGATTCTTGGCCACAGCGGAGCTGGCAAATCCTCGCTGCTGAGCATCCTTGGCGGCTGGTCTGCTTGCACTGAAG
Seq A exon
GATCTGCCACTATTTACAACACCCAACTCTCTGAAATAATAAACATGGAAGAAATCAGAAATTACACTGGATTTTGTCCACAATTTAATATCTACTTCGATTTTCTTACTGTGAGAGAAAACCTCAGGCTATTTGCTAAAATAAAAGGGATTCCACCGAAAGAAGTGGAACAAGAG
Seq C2 exon
GTAAAAAGCATTATGATGGAATTAGACATGCACAATATTCAAGATGTCATCGCTAAAGAGTTAAGTGGTGGACAGAAGAGAAAACTCACATTTGGGATTGCCATTTTAGGAGATCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937-'10-15,'10-13,11-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(26.0=95.0)
A:
PF0000522=ABC_tran=FE(39.7=100)
C2:
PF0000522=ABC_tran=FE(26.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACAGGCATATGTCTTGACGTCT
R:
AGGATCTCCTAAAATGGCAATCCC
Band lengths:
234-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]