RnoEX6050302 @ rn6
Exon Skipping
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98453164-98455314:-
Coord C1 exon
chr10:98455204-98455314
Coord A exon
chr10:98453594-98453769
Coord C2 exon
chr10:98453164-98453283
Length
176 bp
Sequences
Splice sites
3' ss Seq
TCTTTACTTTCTCTGTGTAGGCT
3' ss Score
10.33
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTCTGGGATTTGATATATACGAAGGCCAGATCACTGCCCTTCTTGGTCATAGTGGAGCTGGGAAAACCACCCTGATAAACACACTCAGTGGACTGTCACCTCCTACTACAG
Seq A exon
GCTCCATCACCATTTATAATCAGACAGTTTCAGAGACGGAGGACTCCTACGCTGTCCCCAAGCTCACTGGAGTTTGCCCACAATCCAACATACAGTTTGGTTTCCTCACTGTGCAGGAGAATCTCAGGCTTTTTGCCAAGATAAAGGGAATTCTGCCGCAGGAAGTGGAGCAAGAG
Seq C2 exon
GTACGACAAGTTTTACGGGACTTAGAAATGGAAAATATCCAAGACACTCTTGCTCAGAATTTAAGTGGAGGACAAAAAAGGAAGCTGACTTTTGGGATCGCCATTTTAGGAGACCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.085 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(25.2=100)
A:
PF0000522=ABC_tran=FE(39.5=100)
C2:
PF0000522=ABC_tran=FE(26.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGATTTGATATATACGAAGGCCA
R:
CTGGGGGTCTCCTAAAATGGC
Band lengths:
228-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]