GgaEX6016356 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:7931748-7932428:-
Coord C1 exon
chr18:7932318-7932428
Coord A exon
chr18:7932060-7932235
Coord C2 exon
chr18:7931748-7931867
Length
176 bp
Sequences
Splice sites
3' ss Seq
CTTTGTATTTGTATAAACAGGCT
3' ss Score
7.81
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTTGTCTTTTACTATTTACGAGGGTCAGATCACTGCCTTGCTCGGTCAAAGTGGGGCTGGAAAGACAACACTGTTAAATGTGCTCAGTGGGCTGACTTCACCTTCTGAAG
Seq A exon
GCTCTGCAACCATCTATGACTACAAGCTGTCAGAGATAGGAGATAGGGAAGAGATCAGAGAGATGGTCGGTGTTTGCCCACAGTTCAACACACAGTTCGAAGTCCTAACGGTGAAAGAAAATTTGCGAACCTTTGCAGAGATCAAGGGCATCAAATCCAAAGAGGTAGAGCGAGAG
Seq C2 exon
GTGCAAAACATTTTGGAACTGCTGGATATCAGTAGTGTGCAAGACACTCAAGCTGAGAAACTGAGTGGTGGGCAAAAAAGGAAGTTATCCATTGGGATAGCCATGCTTGGGAACCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(25.2=100)
A:
PF0000522=ABC_tran=FE(39.5=100)
C2:
PF0000522=ABC_tran=FE(26.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGTCTTTTACTATTTACGAGGGT
R:
GGTTCCCAAGCATGGCTATCC
Band lengths:
226-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]