MmuEX6090792 @ mm9
Exon Skipping
Gene
ENSMUSG00000020620 | Abca8b
Description
ATP-binding cassette, sub-family A (ABC1), member 8b [Source:MGI Symbol;Acc:MGI:1351668]
Coordinates
chr11:109828343-109830486:-
Coord C1 exon
chr11:109830376-109830486
Coord A exon
chr11:109828904-109829079
Coord C2 exon
chr11:109828343-109828462
Length
176 bp
Sequences
Splice sites
3' ss Seq
ACACTTGATTTTTATGACAGGTT
3' ss Score
6.81
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
ACCTGACGTTGGACATATATGAAGGCCAAATCACAGCAGTACTTGGTCACAGTGGAGCTGGGAAATCAACACTGTTAAATATTCTTAGCGGATTATCTGTTCCTACTAAAG
Seq A exon
GTTCTGTCACCATCTATAATAATAACTTATCAGAAATGGCTGACCTTGAAAACATCTTGAGGATTGCTGGAGTTTGTCCACAAGCCAATGTTCAATTTGACTTCCTTACTGTGAGAGAAAACCTCAGGCTTTTTGCTAAAATAAGAGGAATTCCACCCCAAGATGTGGAGAAAGAG
Seq C2 exon
GTGCAAAGGGTTTTGCTAGAATTGGAAATGAAAAATATCCAAAATATCCTTGCTCAAAACCTAAGTGGGGGACAGAAGAGAAAGCTGACTTTTGGAATCGCCATTTTAGGAGATTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020620-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(25.2=100)
A:
PF0000522=ABC_tran=FE(39.5=100)
C2:
PF0000522=ABC_tran=FE(26.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTTGGACATATATGAAGGCCA
R:
CTGAGAATCTCCTAAAATGGCGA
Band lengths:
226-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: