RnoEX6050278 @ rn6
Exon Skipping
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98278375-98280514:-
Coord C1 exon
chr10:98280404-98280514
Coord A exon
chr10:98278956-98279131
Coord C2 exon
chr10:98278375-98278494
Length
176 bp
Sequences
Splice sites
3' ss Seq
ACACTTGATTTTTATGACAGGTT
3' ss Score
6.81
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
ACCTGACACTGGACATATATGAAGGCCAAATCACAGCTTTACTTGGTCACAGTGGAGCTGGGAAGTCAACACTGTTAAATATCCTTAGTGGATTATCTGTCCCTACCAAAG
Seq A exon
GTTCCGTCACCATCTATAACAATAGATTATCAGAAATGGCTGACCTAGAAAGTGTGTTCAGGATCTCAGGAGTTTGTCCACAATCCAATGTTCAATTTGACTTCCTTACTGTGAGAGAAAACCTCAGACTTTTTGCTAAAATAAGAGGAGTTCCACCCCAAGAGGTGGAGAAAGAG
Seq C2 exon
GTGCAAAGGGTTTTGCTGGAATTGGAAATGAAAAATATTCAAGATATCCTTGCTCGAAACCTAAGTGGTGGACAGAAGAGAAAGCTAACTTTCGGAACTGCCATTTTAGGAGATTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(25.2=100)
A:
PF0000522=ABC_tran=FE(39.5=100)
C2:
PF0000522=ABC_tran=FE(26.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGACACTGGACATATATGAAGGC
R:
GAATCTCCTAAAATGGCAGTTCCG
Band lengths:
226-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]