HsaEX0003156 @ hg38
Exon Skipping
Gene
ENSG00000188157 | AGRN
Description
agrin [Source:HGNC Symbol;Acc:HGNC:329]
Coordinates
chr1:1051253-1051815:+
Coord C1 exon
chr1:1051253-1051369
Coord A exon
chr1:1051628-1051645
Coord C2 exon
chr1:1051728-1051815
Length
18 bp
Sequences
Splice sites
3' ss Seq
GTGTCCCGGGGGATTCTCAGGAC
3' ss Score
2.95
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GTTCCGCACACCGTCCTCAACCTGAAGGAGCCGCTCTACGTAGGGGGCGCTCCCGACTTCAGCAAGCTGGCCCGTGCTGCTGCCGTGTCCTCTGGCTTCGACGGTGCCATCCAGCTG
Seq A exon
GACCGCACTGCGAGAAGG
Seq C2 exon
GGCTGGTGGAGAAGTCAGCGGGGGACGTGGATACCTTGGCCTTTGACGGGCGGACCTTTGTCGAGTACCTCAACGCTGTGACCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188157-'65-71,'65-70,66-71
Average complexity
S*
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005418=Laminin_G_1=FE(28.8=100)
A:
PF0005418=Laminin_G_1=PD(6.1=12.3),PF0000822=EGF=WD(100=52.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCGACTTCAGCAAGCTG
R:
CCGTCAAAGGCCAAGGTATCC
Band lengths:
117-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development