MmuEX6098671 @ mm9
Exon Skipping
Gene
ENSMUSG00000041936 | Agrn
Description
agrin [Source:MGI Symbol;Acc:MGI:87961]
Coordinates
chr4:155542842-155543445:-
Coord C1 exon
chr4:155543329-155543445
Coord A exon
chr4:155543012-155543204
Coord C2 exon
chr4:155542842-155542929
Length
193 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCCTCTCTTCTTCAGGTG
3' ss Score
13.21
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GTCCCGCACACCATGCTCAACCTCAAGGAGCCCCTCTATGTGGGGGGAGCTCCTGACTTCAGCAAGCTGGCTCGGGGCGCTGCAGTGGCCTCCGGCTTTGATGGTGCCATCCAGCTG
Seq A exon
GTGTCTCTAAGAGGCCATCAGCTGCTGACTCAGGAGCATGTGTTGCGGGCAGTAGATGTAGCGCCTTTTGCAGGCCACCCTTGTACCCAGGCCGTGGACAACCCCTGCCTTAATGGGGGCTCCTGTATCCCGAGGGAAGCCACTTATGAGTGCCTGTGTCCTGGGGGCTTCTCTGGGCTGCACTGCGAGAAGG
Seq C2 exon
GGATAGTTGAGAAGTCAGTGGGGGACCTAGAAACACTGGCCTTTGATGGGCGGACCTACATCGAGTACCTCAATGCTGTGACTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041936-'54-60,'54-58,55-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005418=Laminin_G_1=FE(28.8=100)
A:
PF0005418=Laminin_G_1=PD(6.1=12.3),PF0000822=EGF=WD(100=52.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCATGCTCAACCTCAAGG
R:
CTCTCAGTCACAGCATTGAGGT
Band lengths:
198-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: