GgaEX0028032 @ galGal3
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
NA
Coordinates
chr21:2694939-2699774:-
Coord C1 exon
chr21:2699658-2699774
Coord A exon
chr21:2699318-2699507
Coord C2 exon
chr21:2694939-2695143
Length
190 bp
Sequences
Splice sites
3' ss Seq
TGTCCTTCCCCACCTTCCAGATC
3' ss Score
11.99
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGCCTCACGCCTTCCTCAACCTGAAGGAGCCATTCTACGTGGGGGGAGCCCCCGATTTCAGCAAGCTGGCTCGAGCTGCAGCCATCTCCACCAGCTTCTATGGAGCTGTGCAGAGG
Seq A exon
ATCTCCATCAAAGGGGTTCCCTTGCTGAAGGAGCAGCACATCCGCAGCGCCGTTGAAATCTCCACTTTCCGTGCCCACCCCTGCACCCAAAAGCCCAACCCGTGCCAGAATGGAGGCACCTGCAGCCCCCGGTTGGAGAGCTACGAGTGTGCCTGCCAGAGGGGCTTCTCTGGGGCTCACTGCGAGAAAG
Seq C2 exon
GGGGAATGGAGCGGCTCAGCGTGGCTCACAAGCTGCCCAAGGCTTACAGCACTGGCTTTATTGGCTGTATAAGGGACGTGATTGTCGACCGCCAAGAACTGCATCTGGTGGAGGACGCTTTAAACAACCCCACGATATTACACTGCTCAGCCAAATAGACCCCCAGGGACCCTTCCTTCTCCTTCCCTTCCTCCTGCCTATTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041_MULTIEX1-14/17=13-17
Average complexity
C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.115 C2=0.000
Domain overlap (PFAM):
C1:
PF0005418=Laminin_G_1=FE(27.9=100)
A:
PF0005418=Laminin_G_1=PD(5.9=12.5),PF0000822=EGF=WD(100=51.6)
C2:
PF0005418=Laminin_G_1=PD(25.8=64.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTCAGCAAGCTGGCTCGA
R:
AAGGAGAAGGAAGGGTCCCTG
Band lengths:
247-437
Functional annotations
There are 0 annotated functions for this event