RnoEX6024927 @ rn6
Exon Skipping
Gene
ENSRNOG00000020205 | Agrn
Description
agrin [Source:RGD Symbol;Acc:2067]
Coordinates
chr5:173594075-173594701:-
Coord C1 exon
chr5:173594585-173594701
Coord A exon
chr5:173594246-173594438
Coord C2 exon
chr5:173594075-173594162
Length
193 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCCTCTCTTCTTCAGGTG
3' ss Score
13.21
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GTTCCGCACACCATGCTCAACCTCAAGGAGCCTCTCTATATTGGGGGAGCTCCTGACTTCAGCAAGCTGGCCAGGGGGGCTGCAGTGTCCTCTGGCTTCAATGGTGTCATCCAGCTG
Seq A exon
GTGTCTCTAAGAGGCCATCAACTGCTGACTCAGGAGCATGTGTTGCGGGCAGTAGATGTCTCACCTTTTGCAGACCACCCTTGTACCCAGGCCTTGGGCAACCCCTGCCTTAATGGGGGCTCGTGTGTCCCGAGGGAAGCCACTTATGAATGCCTGTGTCCTGGGGGCTTCTCTGGGCTGCACTGCGAAAAGG
Seq C2 exon
GGCTAGTTGAGAAGTCAGTGGGGGACCTAGAAACACTGGCCTTTGATGGGCGGACCTACATCGAATACCTCAATGCTGTGATTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020205-'56-57,'56-56,57-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005418=Laminin_G_1=FE(27.9=100)
A:
PF0005418=Laminin_G_1=PD(5.9=12.3),PF0000822=EGF=WD(100=52.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCATGCTCAACCTCAAGG
R:
CTCTCAATCACAGCATTGAGGT
Band lengths:
198-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]