GgaEX0028032 @ galGal4
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
agrin [Source:RefSeq peptide;Acc:NP_990858]
Coordinates
chr21:2714742-2715644:-
Coord C1 exon
chr21:2715528-2715644
Coord A exon
chr21:2715188-2715377
Coord C2 exon
chr21:2714742-2714829
Length
190 bp
Sequences
Splice sites
3' ss Seq
TGTCCTTCCCCACCTTCCAGATC
3' ss Score
11.99
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGCCTCACGCCTTCCTCAACCTGAAGGAGCCATTCTACGTGGGGGGAGCCCCCGATTTCAGCAAGCTGGCTCGAGCTGCAGCCATCTCCACCAGCTTCTATGGAGCTGTGCAGAGG
Seq A exon
ATCTCCATCAAAGGGGTTCCCTTGCTGAAGGAGCAGCACATCCGCAGCGCCGTTGAAATCTCCACTTTCCGTGCCCACCCCTGCACCCAAAAGCCCAACCCGTGCCAGAATGGAGGCACCTGCAGCCCCCGGTTGGAGAGCTACGAGTGTGCCTGCCAGAGGGGCTTCTCTGGGGCTCACTGCGAGAAAG
Seq C2 exon
TGATCATTGAGAAGGCAGCTGGAGATGCAGAGGCCATTGCATTTGATGGTAGGACGTACATGGAGTACCACAATGCCGTGACAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041-'66-58,'66-57,67-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.109 C2=0.000
Domain overlap (PFAM):
C1:
PF0005418=Laminin_G_1=FE(27.9=100)
A:
PF0005418=Laminin_G_1=PD(5.9=12.5),PF0000822=EGF=WD(100=51.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCACGCCTTCCTCAAC
R:
TCTTTGTCACGGCATTGTGGT
Band lengths:
202-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]