BtaEX6069632 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013191 | AGRN
Description
agrin [Source:HGNC Symbol;Acc:HGNC:329]
Coordinates
chr16:52676906-52677547:-
Coord C1 exon
chr16:52677431-52677547
Coord A exon
chr16:52677073-52677265
Coord C2 exon
chr16:52676906-52676993
Length
193 bp
Sequences
Splice sites
3' ss Seq
TGTCATGCCCCACCTCCCAGGTC
3' ss Score
8.55
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GTGCCACACACCGTTCTCAACCTAAAGGAGCCGCTCTTTGTTGGGGGGGCCCCTGACTTCAGCAAGCTGGCCCGAGCAGCTGCTGTGTCCTCTGGCTTTGATGGAGCCATCCAGCTG
Seq A exon
GTCTCCCTGAATGGCCGCCAACTGCTGACCCGTGAGAACGTGGTCCGGGCCGTGGACGTCTCGTCCTTTGCAGACCACCCTTGTACCCAGGCTGAGGGTCAGCCTTGCCTCCATGGGGCTTCCTGTCTCCCCCGCGAGGCCTCCTATGAGTGCCTGTGTCCTGCAGGCTTCTCAGGGCTGCACTGTGAGAAGG
Seq C2 exon
GCTTGATTGAGAAGTCAGCTGGGGACCTGGACGCACTGGCCTTTGATGGACGGACCTACATCGAGTACCTCAACGCTGTGACCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013191-'42-49,'42-48,43-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005418=Laminin_G_1=FE(28.8=100)
A:
PF0005418=Laminin_G_1=PD(6.1=12.3),PF0000822=EGF=WD(100=52.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCACACACCGTTCTCAAC
R:
CTCGGTCACAGCGTTGAGGTA
Band lengths:
202-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]