GgaEX0028031 @ galGal3
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
NA
Coordinates
chr21:2694939-2698959:-
Coord C1 exon
chr21:2698872-2698959
Coord A exon
chr21:2696201-2696425
Coord C2 exon
chr21:2694939-2695143
Length
225 bp
Sequences
Splice sites
3' ss Seq
TCTGTGCTCTCCCGACATAGCGA
3' ss Score
7.73
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
TGATCATTGAGAAGGCAGCTGGAGATGCAGAGGCCATTGCATTTGATGGTAGGACGTACATGGAGTACCACAATGCCGTGACAAAGAG
Seq A exon
CGAGAAGGCTTTGCAATCCAACCACTTTGAGCTGAGCATCAAAACAGAAGCAACCCAGGGCCTGATCTTGTGGAGTGGGAAGGGGCTGGAGCGATCCGACTACATCGCCCTCGCCATCGTGGATGGCTTCGTGCAGATGATGTATGACCTGGGCTCCAAGCCAGTCGTCCTGCGGTCCACAGTCCCCATCAACACCAACCACTGGACCCACATCAAAGCATACAG
Seq C2 exon
GGGGAATGGAGCGGCTCAGCGTGGCTCACAAGCTGCCCAAGGCTTACAGCACTGGCTTTATTGGCTGTATAAGGGACGTGATTGTCGACCGCCAAGAACTGCATCTGGTGGAGGACGCTTTAAACAACCCCACGATATTACACTGCTCAGCCAAATAGACCCCCAGGGACCCTTCCTTCTCCTTCCCTTCCTCCTGCCTATTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041_MULTIEX1-16/17=15-17
Average complexity
S*
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.171 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005418=Laminin_G_1=PU(51.5=82.9)
C2:
PF0005418=Laminin_G_1=PD(25.8=64.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCATTGAGAAGGCAGCTGG
R:
GCAATAGGCAGGAGGAAGGGA
Band lengths:
292-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]