MmuEX6098673 @ mm10
Exon Skipping
Gene
ENSMUSG00000041936 | Agrn
Description
agrin [Source:MGI Symbol;Acc:MGI:87961]
Coordinates
chr4:156165290-156168820:-
Coord C1 exon
chr4:156168733-156168820
Coord A exon
chr4:156167282-156167506
Coord C2 exon
chr4:156165290-156166653
Length
225 bp
Sequences
Splice sites
3' ss Seq
CCCATCCTTTTACTTTTTAGTGA
3' ss Score
8.69
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GGATAGTTGAGAAGTCAGTGGGGGACCTAGAAACACTGGCCTTTGATGGGCGGACCTACATCGAGTACCTCAATGCTGTGACTGAGAG
Seq A exon
TGAGAAAGCGCTGCAGAGCAACCACTTTGAGCTGAGCTTACGCACTGAGGCCACGCAGGGGCTGGTGCTGTGGATTGGAAAGGTTGGAGAACGTGCAGACTACATGGCTCTGGCCATTGTGGATGGGCACCTACAACTGAGCTATGACCTAGGCTCCCAGCCAGTTGTGCTGCGCTCCACTGTGAAGGTCAACACCAACCGCTGGCTTCGAGTCAGGGCTCACAG
Seq C2 exon
GAGGCCTACAGAAGCTTCCTGTGGGGCAGGCTCTCCCCAAGGCCTATGGCACGGGTTTTGTGGGCTGTCTGCGGGACGTGGTAGTGGGCCATCGCCAGCTGCATCTGCTGGAGGACGCTGTCACCAAACCAGAGCTAAGACCCTGCCCCACTCTCTGAGCTGCCACTAGAGCTGCCACCTTCCCTCCTGTAATTATTTTCTATTTTTGTAAACTTGTTGCATTTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGCACCTCGAGCCCTGGGCTTTGAAGGCAGCCTTAGGACAAACTCCTCTGCCTAAGGCATCATGCCTCAGCCCCTTGCACTGTATGTTCCTATATGTCTACTTGTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041936_MULTIEX1-16/17=13-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
PF0005418=Laminin_G_1=PU(47.0=81.6)
C2:
PF0005418=Laminin_G_1=PD(25.8=64.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGACCTACATCGAGTACCT
R:
GCCAACGTGCAGTCAAGAAAA
Band lengths:
292-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types