DreEX6080495 @ danRer10
Exon Skipping
Gene
ENSDARG00000079388 | agrn
Description
agrin [Source:ZFIN;Acc:ZDB-GENE-030131-1033]
Coordinates
chr23:23964926-23979689:+
Coord C1 exon
chr23:23964926-23965013
Coord A exon
chr23:23976682-23976906
Coord C2 exon
chr23:23979586-23979689
Length
225 bp
Sequences
Splice sites
3' ss Seq
CCTGTTTCTCTTTGATCTAGCGA
3' ss Score
8.91
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CAATATTTGAGAAGTCCGCTGGGGACACGGAGGCCATTGCGTTTGATGGTCATACATTCATCGAATATCACAACGGAGTCACCAAAAG
Seq A exon
CGAGAAAGCCCTGCTGGTGAATAAATTCGAGCTGAGCATCAGGACGGAGGCTACGCATGGTCTGATTTTGTGGAGCGGAAAGGGAGTTGAGCGCTCTGACTACATCGCCCTCGCCATTGTGGATGGAAGAGTACAGATGACCTATGACCTCGGCTCCAAGCCTGTGGTGCTGCGCTCCACTGTACGGGTCAACACCAACCACTGGATACGAATTAAGGCCAGCAG
Seq C2 exon
AGCGCTCAGAGATGGCTCTCTGCAGGTTGGTAATGAGGCAGCTGTCACTGGGTCTTCACCCTTGGCTGCCACACAGCTGGACACAGACGGGGCTCTCTGGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079388-'44-52,'44-51,47-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.002 C2=0.004
Domain overlap (PFAM):
C1:
NO
A:
PF0005418=Laminin_G_1=PU(47.0=81.6)
C2:
PF0005418=Laminin_G_1=FE(26.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTTGAGAAGTCCGCTGGGGA
R:
CAACCAGAGAGCCCCGTCT
Band lengths:
188-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]