GgaEX0028031 @ galGal4
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
agrin [Source:RefSeq peptide;Acc:NP_990858]
Coordinates
chr21:2711659-2713223:-
Coord C1 exon
chr21:2713191-2713223
Coord A exon
chr21:2712154-2712378
Coord C2 exon
chr21:2711659-2711762
Length
225 bp
Sequences
Splice sites
3' ss Seq
TCTGTGCTCTCCCGACATAGCGA
3' ss Score
7.73
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
TCCCGACGCATTGGACTACCCTGCTGAGCCCAG
Seq A exon
CGAGAAGGCTTTGCAATCCAACCACTTTGAGCTGAGCATCAAAACAGAAGCAACCCAGGGCCTGATCTTGTGGAGTGGGAAGGGGCTGGAGCGATCCGACTACATCGCCCTCGCCATCGTGGATGGCTTCGTGCAGATGATGTATGACCTGGGCTCCAAGCCAGTCGTCCTGCGGTCCACAGTCCCCATCAACACCAACCACTGGACCCACATCAAAGCATACAG
Seq C2 exon
AGTACAGAGAGAAGGCTCCCTCCAGGTCGGCAACGAAGCTCCCATCACTGGCTCTTCACCGCTGGGTGCCACACAGCTGGACACGGATGGGGCCCTGTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041-'70-63,'70-61,71-63=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.792 A=0.031 C2=0.222
Domain overlap (PFAM):
C1:
NO
A:
PF0005418=Laminin_G_1=PU(47.0=81.6)
C2:
PF0005418=Laminin_G_1=FE(26.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCGACGCATTGGACTACC
R:
CACAGGGCCCCATCCGTG
Band lengths:
132-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]