BtaEX6069634 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013191 | AGRN
Description
agrin [Source:HGNC Symbol;Acc:HGNC:329]
Coordinates
chr16:52674953-52676993:-
Coord C1 exon
chr16:52676906-52676993
Coord A exon
chr16:52675521-52675745
Coord C2 exon
chr16:52674953-52675056
Length
225 bp
Sequences
Splice sites
3' ss Seq
ACCAGCTCTCTGCCCACTAGTGA
3' ss Score
4.68
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GCTTGATTGAGAAGTCAGCTGGGGACCTGGACGCACTGGCCTTTGATGGACGGACCTACATCGAGTACCTCAACGCTGTGACCGAGAG
Seq A exon
TGAGAAGGCACTCCAGAGCAACCACTTTGAGCTGAGCCTGCGCACTGAGGCCACACAGGGGCTGGTGCTGTGGAGTGGCAAGGCCACGGAGCGGGCTGACTACATCGCACTGGCCATCGTGGACGGGCGCCTGCAACTGGCTTATGACCTGGGCTCCCAGCCCGTGGTGTTGCGCTCCACCGTACCAGTGAATACCAACCGCTGGTTGCGGGTCAGGGCACACAG
Seq C2 exon
GAAACAGAGGGAAGGTTCCCTTCAGGTGGGCAACGAGGCCCCTGTGACTGGCTCCTCCCCACTGGGTGCCACGCAGCTGGACACAGATGGAGCCCTGTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013191-'44-55,'44-53,48-55=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.493
Domain overlap (PFAM):
C1:
NO
A:
PF0005418=Laminin_G_1=PU(47.0=81.6)
C2:
PF0005418=Laminin_G_1=FE(26.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGATTGAGAAGTCAGCTGG
R:
CCACAGGGCTCCATCTGTGTC
Band lengths:
188-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]