HsaEX0004373 @ hg38
Exon Skipping
Gene
ENSG00000283294 | RP11-681B3.4
Description
NA
Coordinates
chr18:14227611-14234815:+
Coord C1 exon
chr18:14227611-14227760
Coord A exon
chr18:14232525-14232637
Coord C2 exon
chr18:14234687-14234815
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTTAAACACTTTTTTTTAAGCCT
3' ss Score
4.61
5' ss Seq
TGGGTATGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
GTGGTTATGAGACAACTTCAACAAGAAGTGGCTGATTCCCTTAAAAAATTAACTATGTTAGAGTCTCCACTGGAAGGTACATCATGTTGTCACATTAATTTGGATGAGACACAGGCCTCAAAGAAGAAATTATTTCAAGTGGAAAGTCAA
Seq A exon
CCTGAAGAAAAAAATGAAGAATTAAGGAAAGTTTTTGTGTTAGTATCATCACTGGAGTATAATGTGAATCAAATAAGAAAGAAAAATCATGAATTAGAAGAAGAGGCAACTGG
Seq C2 exon
ATATAAGAAACTCCTGGAAATGACAATAAATATGTTAATGTATTTGGAAATGAAGACATCGATTGCCATGGAGACTTAAATACAGATCAACTGAAAATGAATATTCTGATTAAGAAGCTAAAACATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000283294-'4-3,'4-2,6-3
Average complexity
C2
Mappability confidence:
100%=100=75%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTTATGAGACAACTTCAACAAGA
R:
TCAGTTGATCTGTATTTAAGTCTCCA
Band lengths:
244-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development