HsaEX0004373 @ hg19
Exon Skipping
Gene
ENSG00000186481 | ANKRD20A5
Description
ankyrin repeat domain 20 family, member A5, pseudogene [Source:HGNC Symbol;Acc:33833]
Coordinates
chr18:14227610-14234814:+
Coord C1 exon
chr18:14227610-14227759
Coord A exon
chr18:14232524-14232636
Coord C2 exon
chr18:14234686-14234814
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTTAAACACTTTTTTTTAAGCCT
3' ss Score
4.61
5' ss Seq
TGGGTATGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
GTGGTTATGAGACAACTTCAACAAGAAGTGGCTGATTCCCTTAAAAAATTAACTATGTTAGAGTCTCCACTGGAAGGTACATCATGTTGTCACATTAATTTGGATGAGACACAGGCCTCAAAGAAGAAATTATTTCAAGTGGAAAGTCAA
Seq A exon
CCTGAAGAAAAAAATGAAGAATTAAGGAAAGTTTTTGTGTTAGTATCATCACTGGAGTATAATGTGAATCAAATAAGAAAGAAAAATCATGAATTAGAAGAAGAGGCAACTGG
Seq C2 exon
ATATAAGAAACTCCTGGAAATGACAATAAATATGTTAATGTATTTGGAAATGAAGACATCGATTGCCATGGAGACTTAAATACAGATCAACTGAAAATGAATATTCTGATTAAGAAGCTAAAACATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186481_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTTATGAGACAACTTCAACAAGA
R:
TCAGTTGATCTGTATTTAAGTCTCCA
Band lengths:
244-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)