HsaEX0015264 @ hg19
Exon Skipping
Gene
ENSG00000106069 | CHN2
Description
chimerin (chimaerin) 2 [Source:HGNC Symbol;Acc:1944]
Coordinates
chr7:29440159-29535652:+
Coord C1 exon
chr7:29440159-29440444
Coord A exon
chr7:29519895-29519972
Coord C2 exon
chr7:29535568-29535652
Length
78 bp
Sequences
Splice sites
3' ss Seq
AACTCTTTGCCTGTTCACAGATC
3' ss Score
9.58
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTTTGGAAACCAGACCTTAAACTACAGGCTCTTCCACGACGGGAAACACTTTGTGGGTGAGAAGAGGTTTGAGTCGATTCATGATCTGGTGACAGATGGCTTGATAACACTGTACATAGAAACAAAAGCTGCCGAGTACATTTCAAAAATGACAACTAACCCCATCTATGAACACATTGGATATGCCACCCTACTCAGAGAAAAAGTATCCAGAAGGCTGAGCAGGTCTAAAAATGAACCAAGAAAAACAAACGTCACACATGAAGAACACACAGCGGTGGAAAAG
Seq A exon
ATCTCCTCCCTGGTTCGAAGGGCTGCCCTCACACACAACGACAACCACTTCAATTATGAGAAGACACACAACTTTAAG
Seq C2 exon
GTCCACACGTTCCGAGGCCCACACTGGTGTGAATATTGTGCCAATTTCATGTGGGGGCTCATCGCCCAAGGGGTCCGGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106069_MULTIEX2-9/14=7-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(45.1=33.3)
A:
PF0013017=C1_1=PU(5.7=11.5)
C2:
PF0231811=FYVE_2=FE(24.6=100),PF0013017=C1_1=FE(52.8=100),PF087466=zf-RING-like=PU(47.5=65.5)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATATGCCACCCTACTCAGA
R:
TGAGCCCCCACATGAAATTGG
Band lengths:
170-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)