GgaEX1015386 @ galGal3
Exon Skipping
Gene
ENSGALG00000011164 | CHN2
Description
NA
Coordinates
chr2:33663075-33711745:+
Coord C1 exon
chr2:33663075-33663360
Coord A exon
chr2:33704997-33705074
Coord C2 exon
chr2:33711661-33711745
Length
78 bp
Sequences
Splice sites
3' ss Seq
AACTCTTTGCCTATTCGCAGATC
3' ss Score
8.82
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ATTTGGCAATCAGACCTTAAACTACAGGTTGTTCTATGATGGGAAGCACTTCGTTGGGGAGAAAAGATTCGAATCAATCCATGATCTAGTAACAGATGGCTTGATAACGTTGTATATAGAAACAAAGGCTTCTGAGTATATTTCCAAAATGACGACAAATCCCATCTACGAACACATTGGATATGCCACACTGCTTAGAGAGAAGGTCTCCCGGAGGCTGAGCAGAACAAAAAACGAATCAAGAAAAGCAAGTGTAACAAGTGAAGAAAATACCCCGGTTGAGAAG
Seq A exon
ATCACCTCCTTGGTCCGAAGAGCAGCCTTAACTCAAAACGACAACCATTTCAACTATGAAAAAGCACACAATTTTAAG
Seq C2 exon
GTCCACACGTTTCGAGGTCCACACTGGTGTGAATACTGTGCCAACTTCATGTGGGGTCTCATCGCTCAGGGAGTGAGGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011164-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(45.1=33.3)
A:
PF0013017=C1_1=PU(5.7=11.5)
C2:
PF0013017=C1_1=FE(52.8=100),PF087466=zf-RING-like=PU(48.7=65.5),PF138311=PHD_2=PU(24.1=24.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACACTGCTTAGAGAGAAGG
R:
CTCACTCCCTGAGCGATGAGA
Band lengths:
179-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]