RnoEX6013629 @ rn6
Exon Skipping
Gene
ENSRNOG00000009411 | Chn2
Description
chimerin 2 [Source:RGD Symbol;Acc:620140]
Coordinates
chr4:84376246-84439821:+
Coord C1 exon
chr4:84376246-84376531
Coord A exon
chr4:84424804-84424881
Coord C2 exon
chr4:84439737-84439821
Length
78 bp
Sequences
Splice sites
3' ss Seq
AGCTCTTTGCCTGTTCACAGATC
3' ss Score
9.31
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTTTGGAAACCAGACCTTAAACTACCGGCTCTTCCATGATGGGAAGCATTTTGTGGGTGAGAAGAGGTTCGAATCCATTCACGACCTGGTGACAGATGGCTTGATCACGCTCTACATAGAGACCAAGGCTGCTGAGTACATTGCAAAAATGACCACAAATCCCATCTACGAGCACATCGGATACGCCACTCTCCTCAGAGAAAAAGTGTCCAGAAGGCTGAGCAGGTCTAAAAATGAGTCAAGAAAGGCTGGTGTCACCCACGAGGAACACACACCAGTGGAGAAG
Seq A exon
ATCTCTTCACTGGTCCGAAGAGCTGCCCTCACACACAATGACAACCACTTCAACTATGAGAAGACACACAACTTCAAG
Seq C2 exon
GTGCACACATTTCGGGGCCCACACTGGTGTGAATACTGTGCCAATTTTATGTGGGGGCTCATCGCCCAGGGAGTCCGGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009411-'19-22,'19-19,26-22=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(45.1=33.3)
A:
PF0013017=C1_1=PU(5.7=11.5)
C2:
PF0013017=C1_1=FE(52.8=100),PF087466=zf-RING-like=PU(48.7=65.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATACGCCACTCTCCTCAGA
R:
GCGATGAGCCCCCACATAAAA
Band lengths:
173-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]