BtaEX0008980 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020931 | CHN2
Description
CHN2 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q0VD41]
Coordinates
chr4:67086655-67186851:-
Coord C1 exon
chr4:67186566-67186851
Coord A exon
chr4:67104718-67104795
Coord C2 exon
chr4:67086655-67086739
Length
78 bp
Sequences
Splice sites
3' ss Seq
AACTCTTTGCCTGTCCACAGATC
3' ss Score
11.15
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTTTGGAAATCAGACCTTAAACTACAGGCTCTTCTATGATGGAAAACACTTTGTGGGCGAGAAGAGGTTTGAATCAATTCATGATTTGGTCACAGATGGCTTGATAACACTGTACATAGAAACAAAAGCTTCAGAATACATTTCCAAAATGACAACAAACCCCATCTATGAACACATTGGATATGCCACTCTACTCAGAGAAAAAGTATCCAGAAGGCTAAGCAGGTCTAAAAACGAATCAAGAAAAGCCAGCGTCACAAATGAAGAGCACACACCCGTCGAAAAG
Seq A exon
ATCTCCTCCCTGGTCCGAAGGGCCGCCCTCACACACAACGACAACCACTTCAACTATGAGAAGACACACAACTTTAAG
Seq C2 exon
GTCCACACATTCCGAGGCCCGCACTGGTGTGAGTACTGTGCCAACTTCATGTGGGGGCTCATTGCCCAAGGGGTCCGGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020931_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(45.1=33.3)
A:
PF0013017=C1_1=PU(5.7=11.5)
C2:
PF0013017=C1_1=FE(52.8=100),PF087466=zf-RING-like=PU(48.7=65.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCATCTATGAACACATTGGA
R:
CCCACATGAAGTTGGCACAGT
Band lengths:
183-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development