MmuEX6004426 @ mm9
Exon Skipping
Gene
ENSMUSG00000004633 | Chn2
Description
chimerin (chimaerin) 2 [Source:MGI Symbol;Acc:MGI:1917243]
Coordinates
chr6:54170411-54236172:+
Coord C1 exon
chr6:54170411-54170696
Coord A exon
chr6:54223070-54223147
Coord C2 exon
chr6:54236088-54236172
Length
78 bp
Sequences
Splice sites
3' ss Seq
AGCTCTTTGCCTGTTCACAGATC
3' ss Score
9.31
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTTTGGGAACCAGACCTTAAACTACCGGCTCTTCCACGACGGGAAGCACTTTGTGGGTGAGAAGAGGTTCGAATCCATTCACGACCTGGTGACAGATGGCTTGATCACACTCTACATAGAGACCAAGGCTGCTGAGTACATCGCGAAAATGACCACAAATCCCATCTACGAGCACATCGGATACGCCACTCTCCTCAGAGAAAAAGTGTCCCGAAGGCTGAGCAGGTCTAAAAACGAATCAAGGAAAGCTAGCGTCAGCAACGAGGAGCACACGCCAGTGGAGAAG
Seq A exon
ATCTCTTCACTGGTCCGAAGAGCTGCCCTCACACACAACGACAACCACTTCAACTATGAGAAGACACACAACTTCAAG
Seq C2 exon
GTGCACACATTCCGGGGCCCACACTGGTGTGAATACTGTGCCAATTTTATGTGGGGGCTCATCGCCCAGGGAGTCCGGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004633-'11-14,'11-13,16-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.177 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(45.1=33.3)
A:
PF0013017=C1_1=PU(5.7=11.5),PF0231811=FYVE_2=PU(11.9=46.2)
C2:
PF0013017=C1_1=FE(52.8=100),PF0231811=FYVE_2=FE(27.7=100),PF087466=zf-RING-like=PU(47.5=65.5)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATACGCCACTCTCCTCAGA
R:
GCGATGAGCCCCCACATAAAA
Band lengths:
173-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: