DreEX0021653 @ danRer10
Exon Skipping
Gene
ENSDARG00000011845 | chn2
Description
chimerin 2 [Source:ZFIN;Acc:ZDB-GENE-091020-5]
Coordinates
chr16:20548642-20596449:-
Coord C1 exon
chr16:20596179-20596449
Coord A exon
chr16:20565504-20565590
Coord C2 exon
chr16:20548642-20548726
Length
87 bp
Sequences
Splice sites
3' ss Seq
AGATTTTGGCTTGTTCACAGATC
3' ss Score
6.43
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ATTTGGAGGCCAAACTCTCAACTACCGACTCTTCTATGATGGAAAGCACTTTGTGGGAGAAAAACGTTTTGAATCGGTTCATGATCTGGTTACGGATGGTCTCATCACTCTCTACATTGAGACAAAGGCCGCGGAGTACATCGCTAAGATGACCACAAACCCCATTTACCAGCACTTGGGCTATACTTCTCTTTTGAGGGACAAAATTACTCACAGACTCAACCGGACCCGATCTGAGCCCAAAAAAGTCACTTTCCAGCAGGATGAGAAG
Seq A exon
ATCAGCCCATCGCCGCTGAGCAGACGGACCACACTCAAAGATGGACCAGAGAAACACTGTAACTATGAGAAGATACACAACTTTAAG
Seq C2 exon
GTGCACACGTTCAGGGGGCCGCACTGGTGTGAATACTGCGCTAACTTCATGTGGGGTCTCATCGCTCAGGGCGTCCGTTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011845_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.193 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(45.1=35.2)
A:
PF0013017=C1_1=PU(5.7=10.3)
C2:
PF0013017=C1_1=FE(52.8=100),PF087466=zf-RING-like=PU(48.6=62.1),PF138311=PHD_2=PU(22.2=20.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAAACCCCATTTACCAGC
R:
CCCACATGAAGTTAGCGCAGT
Band lengths:
174-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]