HsaEX0015264 @ hg38
Exon Skipping
Gene
ENSG00000106069 | CHN2
Description
chimerin 2 [Source:HGNC Symbol;Acc:HGNC:1944]
Coordinates
chr7:29400543-29496036:+
Coord C1 exon
chr7:29400543-29400598
Coord A exon
chr7:29480279-29480330
Coord C2 exon
chr7:29495952-29496036
Length
52 bp
Sequences
Splice sites
3' ss Seq
AACTCTTTGCCTGTTCACAGATC
3' ss Score
9.58
5' ss Seq
TCAATTATG
5' ss Score
-24.35
Exon sequences
Seq C1 exon
GTTTGGAAACCAGACCTTAAACTACAGGCTCTTCCACGACGGGAAACACTTTGTGG
Seq A exon
ATCTCCTCCCTGGTTCGAAGGGCTGCCCTCACACACAACGACAACCACTTCA
Seq C2 exon
GTCCACACGTTCCGAGGCCCACACTGGTGTGAATATTGTGCCAATTTCATGTGGGGGCTCATCGCCCAAGGGGTCCGGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106069_MULTIEX1-20/28=17-21
Average complexity
S*
Mappability confidence:
80%=96=87%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.168 A=0.549 C2=0.144
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(45.1=33.3)
A:
NO
C2:
PF0231811=FYVE_2=FE(24.6=100),PF0013017=C1_1=FE(52.8=100),PF087466=zf-RING-like=PU(47.5=65.5)
Main Skipping Isoform:
ENST00000222792fB12381
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGACCTTAAACTACAGGCTCT
R:
CTGAGCACCGGACCCCTT
Band lengths:
133-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development