HsaEX0016303 @ hg38
Exon Skipping
Gene
ENSG00000197467 | COL13A1
Description
collagen type XIII alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2190]
Coordinates
chr10:69905787-69918317:+
Coord C1 exon
chr10:69905787-69905822
Coord A exon
chr10:69917289-69917333
Coord C2 exon
chr10:69918285-69918317
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTCTCATTTCTTCCTCCAGGGA
3' ss Score
11.63
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GGAGACCCAGGGATCCAGGGCTACCACGGCCGGAAG
Seq A exon
GGAGAACGGGGCATGCCAGGGATGCCAGGCAAGCATGGAGCCAAG
Seq C2 exon
GGGGCGCCCGGAATTGCCGTGGCTGGGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197467-'28-35,'28-34,31-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(16.9=100),PF0139113=Collagen=FE(20.0=100),PF0139113=Collagen=PU(2.9=16.7)
A:
PF0139113=Collagen=PD(10.4=46.7),PF0139113=Collagen=FE(25.0=100),PF0139113=Collagen=PU(21.9=93.3)
C2:
PF0139113=Collagen=PD(12.5=63.6),PF0139113=Collagen=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACCCAGGGATCCAGG
R:
TTCATCCCAGCCACGGCAATT
Band lengths:
68-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development