MmuEX6048687 @ mm10
Exon Skipping
Gene
ENSMUSG00000058806 | Col13a1
Description
collagen, type XIII, alpha 1 [Source:MGI Symbol;Acc:MGI:1277201]
Coordinates
chr10:61874738-61884711:-
Coord C1 exon
chr10:61884676-61884711
Coord A exon
chr10:61876268-61876312
Coord C2 exon
chr10:61874738-61874770
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCTCTCGTTTCATTTTCCAGGGA
3' ss Score
11.06
5' ss Seq
AAGGTACCC
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGAGACCCAGGGATCCAGGGCTATCATGGCCGCAAG
Seq A exon
GGAGAGCGGGGCATGCCAGGAATGCCAGGCAAGCACGGAGCCAAG
Seq C2 exon
GGGGTTCCTGGGATTGCCGTGGCTGGGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058806-'26-23,'26-22,28-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(16.9=100),PF0139113=Collagen=FE(19.6=100),PF0139113=Collagen=PU(3.1=16.7)
A:
PF0139113=Collagen=PD(4.6=20.0),PF0139113=Collagen=FE(25.0=100),PF0139113=Collagen=FE(21.9=100)
C2:
PF0139113=Collagen=PD(12.5=63.6),PF0139113=Collagen=FE(15.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACCCAGGGATCCAGG
R:
TTCATCCCAGCCACGGCAAT
Band lengths:
68-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types