HsaEX0024949 @ hg38
Exon Skipping
Gene
ENSG00000138399 | FASTKD1
Description
FAST kinase domains 1 [Source:HGNC Symbol;Acc:HGNC:26150]
Coordinates
chr2:169560387-169569252:-
Coord C1 exon
chr2:169569184-169569252
Coord A exon
chr2:169563225-169563350
Coord C2 exon
chr2:169560387-169560785
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTGTATATTTCCTTTAATAGGTT
3' ss Score
9.79
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTTTGCTGGTGAGGCCCATGACCCGCTAGTTGAAGCACTAGTTACAGAAGCATGGAGAAGGCTAGAAAG
Seq A exon
GTTTGATATTAAACTGCTCTCAGAATTTTCCTCTTGCCTAGCAGATCAGCATTTGTATTTTAGTCCATTAATGGGAAAAATAGCTGATATTGTTCATAGGAACTTGGAAACCACACAGGACTTAAG
Seq C2 exon
TTCCTTGTCTGTCTTGATGGTCAACATATCTTCTTTAATATCACGACATTTTCAACAACAACTGGTGAACAAAACAGAACTTCTTTTTGACACCATAGATTCTTCTGAGGTCAACGTTGCAAAAAGCATAGCAAAGTTTCTTCGAAATGTTAGATATCGTTATCAACCACTATTAGAAAGATGTAATAACGTATTTTTAAGTAATGTGGACCACCTTGATTTGGATTCCATCAGTAAAATACTTAGTGTATACAAATTTCTACAATTTAATAGTTTTGAATTTATTATAATGGCTAAAAAGAAGCTAACTGAAATGATTCCTCTGTGTAATCATCCTGCTAGCTTTGTAAAATTGTTTGTAGCATTGGGACCCATTGCAGGACCTGAAGAAAAGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138399-'8-12,'8-11,10-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000453153fB15503
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGCATGGAGAAGGCTAGA
R:
TCCAAATCAAGGTGGTCCACA
Band lengths:
251-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development