BtaEX6009210 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010743 | FASTKD1
Description
Bos taurus FAST kinase domains 1 (FASTKD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102031]
Coordinates
chr2:26744497-26754333:+
Coord C1 exon
chr2:26744497-26744565
Coord A exon
chr2:26751813-26751938
Coord C2 exon
chr2:26753935-26754333
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTGTATATTTCCCTTAATAGGTT
3' ss Score
10.1
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTTTGGTATTGAGGCCCATGACTCACTAGTTGAAGCACTCGTTACAGAAGCATGGAGAAGACTGGAAAG
Seq A exon
GTTTGATATCAGTGTGCTGTCAAAATTTTCCTCTTGCCTGGCAGATCAACATTTATATTATAGTCCATTAATGGGAAAAATAGCTGATATCGTAAATAGGAACTTGGAAAACATACAGGACTTAAG
Seq C2 exon
GTCCTTGTCTGTTTTGATGGTCAGCATATCTTCTTTAATATCACGGCGTTTTCAAGAGAAATTAGTGAACAAAGCAGAATTACTTTTTGACACTATGGATTCTTCCCAGGTCAATACTGCAAGAAGAATAGTACAATTTCTTCGAAATATTAAATATAGATATTACCCACTATTAGAAAGGTGTAATAAAGTATTTTTGAGCAATATGAACCATCTTGATTTGGACTCCATCAGTAAAATACTTAGTCTATACTACTCTCTACAGTTTCATAGTTTTGAATTTATTTTAATGACTAAGAAGAGGCTAACAGAAATGATTCCTCTGTTTGACCACCCTGCTAGCTGTGTAAAATTGTTTGTAGCATTGGGACCCATGGCAGGACCTGAAGAAAAGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010743-'6-4,'6-3,7-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGCATGGAGAAGACTGG
R:
TGGAGTCCAAATCAAGATGGTTCA
Band lengths:
256-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]