DreEX0032144 @ danRer10
Exon Skipping
Gene
ENSDARG00000056128 | fastkd1
Description
FAST kinase domains 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1833]
Coordinates
chr9:48544563-48549562:+
Coord C1 exon
chr9:48544563-48544631
Coord A exon
chr9:48545953-48546078
Coord C2 exon
chr9:48549349-48549562
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCGTGATATTTCTTTTCCAGATT
3' ss Score
9.23
5' ss Seq
CAAGTGTGT
5' ss Score
3.84
Exon sequences
Seq C1 exon
GCTCAAAGTGGAGCATCATGACACTCTTGTGCAGCAGCTGGTGACGGAGGCTTGGAACCGACTGGAGAG
Seq A exon
ATTGCCGATGGGAACACTTTCAAAGTTTGCAGTTTGCCTGAGCGACATGTTCCTGCAACACAGCCCGCTGATGGGTCACATCACTCAGATCGTGAGCCAGAGACTGGACACCATTCAACATGCCAA
Seq C2 exon
AGTCCTCACACCACTGATGGTCAGTATCTACGCCCTGGTGTCGCCTCAACTGCGTGATTCAATAATTAAAAGAGCAGACACCCTATTGGACCAGATGGACCCGTTTCGCTTCAATAACCCCAGACGAGTGGTGCAGTTCTTCAAAAACAGCAGATACATCCACAAACCCCTGCTGGACAAATGCAATCAGCTCTTCCTGCAGAACATTGATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056128-'2-4,'2-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTGTGCAGCAGCTGGTG
R:
CTGCAGGAAGAGCTGATTGCA
Band lengths:
248-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]