GgaEX0014549 @ galGal3
Exon Skipping
Gene
ENSGALG00000009841 | FASTKD1
Description
NA
Coordinates
chr7:20109469-20111244:+
Coord C1 exon
chr7:20109469-20109537
Coord A exon
chr7:20109864-20109989
Coord C2 exon
chr7:20110852-20111244
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGATGTCTTCACAGCCT
3' ss Score
7.04
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCTCAGTGTGGAAAGCCATGATTCACTGGCAGGAGTGCTCGTTACAGAAGCGTGGAAAAGATTAGAAAG
Seq A exon
CCTTAGTTTACCAGCTTTGTCTAAATTTGCACTGTGTTTACACAAGCAGCACAGACATTTTAGTCCCCTAACTGGCAAAATAGCACATCTTGTGGACATGAAACTGGATTCTATACAGGATATAAG
Seq C2 exon
GATCTTGTCAGTTTTGATGATCAGCGTATCTGATGTCATCTCACGGAGTTTTCAAGACCGATTACTACAGAAGGTGGATCAGCTACTGGGAGAAGGAGTCCACTTCAACTATGCCAAAAGAATTGTACAGTTTCTTCAACTTAGTAAACTGACACATTCTCCATTGCTAGAAAAGTGCAACAAGATTTTCTTAAAAAGCACCTCTCATCTTGATTTAGACAATATTAGTCTTATTTTTGGACTCTATGAACAGCTGGGTTTTGACAATGCGGAATTCCGCTTGACTGCTAAACAGCTTCTGTCTGAATCAGTAGATGATTATTGTGATCCTGAAGCCTTTGCAAAATTATTTTTTGTTCTTGGGCCTATGGCTGAGTCCAAGGTAAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009841-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCATGATTCACTGGCAGG
R:
TCTTGTTGCACTTTTCTAGCAATGG
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]