MmuEX6101960 @ mm10
Exon Skipping
Gene
ENSMUSG00000027086 | Fastkd1
Description
FAST kinase domains 1 [Source:MGI Symbol;Acc:MGI:2444596]
Coordinates
chr2:69700124-69711562:-
Coord C1 exon
chr2:69711494-69711562
Coord A exon
chr2:69708511-69708636
Coord C2 exon
chr2:69700124-69700238
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACTTGCGTTTCTTTTAATAGGTT
3' ss Score
11.09
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GTTTGCAGTTGAATCCCATCACCCACTAATCGAAGCACTGGTTACAGAAGCATGGAAAAGACTGGAAAG
Seq A exon
GTTCGATACTAATGTGCTGTCCATATTTTCCACTTGCTTGGCCGATCAGCATCTGTATTTCAGTCCATTAATGGGAAAAATAGCTGATATTGTAAATAGGAGACTGGAAACCATCCAGGACTTAAG
Seq C2 exon
ATCCATCCCTTTTCAGTCCTTGCTATTATTCTCCCATTCAGCATTCTGAACTATGATCCACCTCAAAAGGATGAATTCTTTGGAGCGTGTGTCCAATGCTGTAATTCTTACTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027086_MULTIEX2-1/5=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0674310=FAST_1=PU(46.5=84.6)
Main Skipping Isoform:
ENSMUST00000073152fB1654
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGTTGAATCCCATCACCC
R:
GTAAGAATTACAGCATTGGACACACG
Band lengths:
178-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types