RnoEX0035017 @ rn6
Exon Skipping
Gene
ENSRNOG00000024335 | Fastkd1
Description
FAST kinase domains 1 [Source:RGD Symbol;Acc:1563531]
Coordinates
chr3:55945555-55949854:-
Coord C1 exon
chr3:55949786-55949854
Coord A exon
chr3:55946592-55946717
Coord C2 exon
chr3:55945555-55945953
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACTTGCATTTCTTTCAATAGGTT
3' ss Score
10.63
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GTTTGCAGTTGAATCCCATCACCCACTAATTGAGGCCCTGGTCACAGAAGGGTGGCGAAGACTCGAAAG
Seq A exon
GTTCGATATTAATGTGCTGTCAATATTTTCCACTTGCCTGGCCGATCAGCACTTGTATTTTAGTCCATTAATGGGAAAAATAGCTGACATTGTGAATAGGAAACTGGAAGCCATACAGGACTTAAG
Seq C2 exon
GGCCTTGTCTGTCTTGATGGTCAGCATTTCTTCTTTAATATCACCGTGCTTTCAAGAACGACTGCTGACCAGAGCAGAACTTCTTTTTGACACTGTAGATTCTTCCAAGGTCAACATTGCAAGGAGGATACTACTGTTCCTTCGGAATGTCAAGCACAGTCACTACCCACTGTTAGAGAGGTGCAATCAAGTGTTCATCAGAAATGTGAGCCATCTTGACTTGGAGTCCATCAGTCGAATCCTTAGTCTGTATCAGTCTCTACAGTTCCACAGCTTTGAATTTATCGAGGTGGCTCGAGGGAGGCTGGCTGAGCTGAGCCTCCCTTCTGACCATCCTGAAAGCTTCGTCAGACTGTTTGCTGCGCTGGGGCCGGTGGCCAGGCCTGAGATAAGGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024335_MULTIEX2-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000036585fB5372
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTGAATCCCATCACCCA
R:
TGCACCTCTCTAACAGTGGGT
Band lengths:
250-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]