MmuEX6101960 @ mm9
Exon Skipping
Gene
ENSMUSG00000027086 | Fastkd1
Description
FAST kinase domains 1 [Source:MGI Symbol;Acc:MGI:2444596]
Coordinates
chr2:69545365-69549619:-
Coord C1 exon
chr2:69549551-69549619
Coord A exon
chr2:69546568-69546693
Coord C2 exon
chr2:69545365-69545763
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACTTGCGTTTCTTTTAATAGGTT
3' ss Score
11.09
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GTTTGCAGTTGAATCCCATCACCCACTAATCGAAGCACTGGTTACAGAAGCATGGAAAAGACTGGAAAG
Seq A exon
GTTCGATACTAATGTGCTGTCCATATTTTCCACTTGCTTGGCCGATCAGCATCTGTATTTCAGTCCATTAATGGGAAAAATAGCTGATATTGTAAATAGGAGACTGGAAACCATCCAGGACTTAAG
Seq C2 exon
GGCCTTATCTGTCTTAATGGTCAGCATTTCTTCATTAATATCACCGTGTTTCCAGGAACGACTGGTGATCAGAACAGAACTTCTTTTTGACACTGTAAATTCTTCCAAAGTCAACATTGCAAGAAGGATATTACTGTTTCTTCGAAATGTCAAATACAGTCATTACCCACTGTTAGAGAGGTGTAATCAAGTGTTTATAAGGAACATGAGCCATCTTGATCTGGAGTCCATCAGTAAAATCCTTAACCTGTATCAGTTTCTACAGTTCCACAGCTTTGAATTTGTTGAAGCAGCTCGAGGGAGGCTGGCTGAGATGACCCTCCCTTCTGATCATCCTGAAAGCTTTGTCCGGTTGTTTGCCGCTCTGGGGCCGGTGGCCAGACCTGAGATAAAGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027086-'2-4,'2-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTGAATCCCATCACCCA
R:
ACACCTCTCTAACAGTGGGTA
Band lengths:
249-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: