HsaEX0026115 @ hg38
Exon Skipping
Gene
ENSG00000187239 | FNBP1
Description
formin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17069]
Coordinates
chr9:129929567-129979374:-
Coord C1 exon
chr9:129979318-129979374
Coord A exon
chr9:129957360-129957462
Coord C2 exon
chr9:129929567-129929695
Length
103 bp
Sequences
Splice sites
3' ss Seq
ATTTTCCTCTGATTTTAGAGTAA
3' ss Score
-5.87
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAATCTTTCAAAGAAGTACCAACCTAAAAAGAACTCGAAGGAGGAAGAAGAATACAA
Seq A exon
TAAAAGGCGATTTGAACGCGATTGCAAAGAGGCGGACAGGGCGCAGCAGTACTTTGAGAAAATGGACGCTGACATCAATGTCACAAAAGCGGATGTTGAAAAG
Seq C2 exon
GCCCGACAACAAGCTCAAATACGTCACCAAATGGCAGAGGACAGCAAAGCAGATTACTCATCCATTCTCCAGAAATTCAACCATGAGCAGCATGAATATTACCATACTCACATCCCCAACATCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187239_MULTIEX2-3/3=C1-C2
Average complexity
ME(2-3[96=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=0.142 C2=0.305
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(34.5=100),PF057016=WEMBL=PU(4.0=30.0)
A:
PF057016=WEMBL=FE(25.2=100)
C2:
PF057016=WEMBL=PD(27.4=86.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCTTTCAAAGAAGTACCAACCT
R:
CTGGAAGATGTTGGGGATGTGA
Band lengths:
186-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development