GgaEX1025304 @ galGal3
Exon Skipping
Gene
ENSGALG00000004088 | FNBP1
Description
NA
Coordinates
chr17:6325041-6342374:-
Coord C1 exon
chr17:6342312-6342374
Coord A exon
chr17:6341402-6341506
Coord C2 exon
chr17:6325041-6325169
Length
105 bp
Sequences
Splice sites
3' ss Seq
GATCCTGTTCTTCCTCACAGAGT
3' ss Score
9.88
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
CACTTCCACGATGGCAGAAAGGCACAACAGCACATTGAAACTTGCTGGAAACAACTTGAAGCT
Seq A exon
AGTAAAAGGCGGTTTGAACGTGACTGCAAAGAAGCTGATCGAGCACAGCAATATTTTGAGAAAATGGATGCTGATATCAATGTTACAAAAGCAGATGTTGAGAAG
Seq C2 exon
GCAAGACAGCAAGCCCAGCTGAGACATCAAATGGCAGAAGACAGCAAAGCAGAATATTCTTCCACTCTACAGAAGTTCAACAGTGAGCAGCATGATCATTACTACACACACATACCAAACATCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004088-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=0.200 C2=0.558
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCACGATGGCAGAAAGG
R:
TGGAAGATGTTTGGTATGTGTGTGT
Band lengths:
190-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]