RnoEX0036515 @ rn6
Exon Skipping
Gene
ENSRNOG00000008258 | Fnbp1
Description
formin binding protein 1 [Source:RGD Symbol;Acc:621350]
Coordinates
chr3:9892149-9914175:-
Coord C1 exon
chr3:9914113-9914175
Coord A exon
chr3:9913079-9913183
Coord C2 exon
chr3:9892149-9892277
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGGCTGTGCTCTGTCTGCAGAGT
3' ss Score
9.77
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AATTTCCATGATGGACGGAAGGCTCAGCAGCACATAGAGACGTGCTGGAAGCAGCTGGAGTCG
Seq A exon
AGTAAGAGGAGGTTTGAGCGGGACTGTAAGGAGGCCGACCGTGCACAGCAGTACTTTGAGAAAATGGACGCCGACATCAATGTGACCAAGGCGGATGTGGAAAAG
Seq C2 exon
GCGCGACAACAAGCTCAGATGCGCCAGCAAATGGCAGAGGACAGCAAAGCTGATTACTCCTTAATCCTGCAGAGGTTCAACCAGGAGCAGTGGGAGTACTACCACACCCACATCCCCAACATCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008258-'7-6,'7-5,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.236 A=0.204 C2=0.243
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGATGGACGGAAGGCTC
R:
GGAAGATGTTGGGGATGTGGG
Band lengths:
186-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]