BtaEX6046669 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020313 | FNBP1
Description
Bos taurus formin binding protein 1 (FNBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206712]
Coordinates
chr11:100318607-100345267:-
Coord C1 exon
chr11:100345205-100345267
Coord A exon
chr11:100344665-100344769
Coord C2 exon
chr11:100318607-100318735
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCATCTTCCTCTGCTCTTAGAGT
3' ss Score
9.64
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CACTTTCACGATGGACGGAAGGCACAGCAACACATAGAGATGTGCTGGAAGCAACTAGAATCA
Seq A exon
AGTAAAAGACGTTTTGAGCGGGATTGCAAAGAGGCTGACCGAGCCCAGCAGTACTTTGAGAAAATGGATGCTGACATAAATGTTACGAAAGCAGATGTTGAAAAG
Seq C2 exon
GCACGACAGCAAGCTCAAACGCGTCATCAAATGGCAGAGGACAGCAAAACAGATTACTCATCAATTCTACAGAAATTCAACCACGAGCAGCATGAATATTACCACACTCACGTTCCCAATATCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020313-'6-10,'6-8,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=0.171 C2=0.481
Domain overlap (PFAM):
C1:
PF078236=CPDase=FE(12.7=100)
A:
PF078236=CPDase=FE(21.5=100)
C2:
PF078236=CPDase=FE(26.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCACGATGGACGGAAGGCA
R:
CTGAAAGATATTGGGAACGTGAG
Band lengths:
189-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]