DreEX0033188 @ danRer10
Exon Skipping
Gene
ENSDARG00000101028 | fnbp1b
Description
formin binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-091117-6]
Coordinates
chr21:6223293-6230994:+
Coord C1 exon
chr21:6223293-6223355
Coord A exon
chr21:6223953-6224057
Coord C2 exon
chr21:6230866-6230994
Length
105 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGTGTGTGTGTTTAGTGT
3' ss Score
9.16
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
CATTTCCATGATGGACGAAAGGCACAGCAGCACATCGAAGCCGGTTGGAAACAGCTGGAATCT
Seq A exon
TGTAAGCGGAAATTCGAGCGAGATTGTAAAGAAGCTGATCGAGCCCAGCAGTACTTCGAGAAGATGGATGCAGACATCAACGTGACGAAAGCAGATGTAGAGAAG
Seq C2 exon
GCACGGCAGCAGGCTCAGATGAGGCACCAGATGGCTTCTGACAGCAAGAGCGAATATTCCTCATACCTGCAGAAGTTCAACCAGGAACAGAACGAACATTATTACACCATCATCCCTAATATTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101028_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.442 A=0.147 C2=0.369
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGATGGACGAAAGGCACA
R:
TGGAAAATATTAGGGATGATGGTGT
Band lengths:
186-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]