HsaEX0026115 @ hg19
Exon Skipping
Gene
ENSG00000187239 | FNBP1
Description
formin binding protein 1 [Source:HGNC Symbol;Acc:17069]
Coordinates
chr9:132691846-132720832:-
Coord C1 exon
chr9:132720770-132720832
Coord A exon
chr9:132719639-132719743
Coord C2 exon
chr9:132691846-132691974
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTATTTTCCTCTGATTTTAGAGT
3' ss Score
9.17
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AACTTTCACGATGGCCGTAAAGCACAGCAGCACATCGAGACTTGCTGGAAGCAGCTTGAATCT
Seq A exon
AGTAAAAGGCGATTTGAACGCGATTGCAAAGAGGCGGACAGGGCGCAGCAGTACTTTGAGAAAATGGACGCTGACATCAATGTCACAAAAGCGGATGTTGAAAAG
Seq C2 exon
GCCCGACAACAAGCTCAAATACGTCACCAAATGGCAGAGGACAGCAAAGCAGATTACTCATCCATTCTCCAGAAATTCAACCATGAGCAGCATGAATATTACCATACTCACATCCCCAACATCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187239_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=0.148 C2=0.304
Domain overlap (PFAM):
C1:
PF057016=WEMBL=FE(14.8=100)
A:
PF057016=WEMBL=FE(25.2=100)
C2:
PF057016=WEMBL=PD(27.4=86.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTAAAGCACAGCAGCACAT
R:
CTGGAAGATGTTGGGGATGTGA
Band lengths:
178-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)