DreEX6048521 @ danRer10
Exon Skipping
Gene
ENSDARG00000036156 | fnbp1a
Description
formin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-081105-105]
Coordinates
chr8:11575043-11582366:-
Coord C1 exon
chr8:11582304-11582366
Coord A exon
chr8:11578185-11578289
Coord C2 exon
chr8:11575043-11575057
Length
105 bp
Sequences
Splice sites
3' ss Seq
ATATGTTTGTTTATTTGCAGAGT
3' ss Score
8.75
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
CATTTCCATGATGGCCGCCGAGCGCAGCAGCACATTGAGAATTCCTGGAAGCAGCTGGAATCG
Seq A exon
AGTAAGAGAAGATTTGAGAGAGACTGTAAGGAAGCGGATCGCGCCCAGCATTACTTTGACAAGATGGACGCGGACATTAACGTGACTAAAGCTGATGTGGAAAAG
Seq C2 exon
CGGTGTTCTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036156-'4-5,'4-4,5-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.524 A=0.114 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]