HsaEX0030246 @ hg38
Exon Skipping
Gene
ENSG00000180448 | ARHGAP45
Description
Rho GTPase activating protein 45 [Source:HGNC Symbol;Acc:HGNC:17102]
Coordinates
chr19:1073506-1074014:+
Coord C1 exon
chr19:1073506-1073590
Coord A exon
chr19:1073676-1073746
Coord C2 exon
chr19:1073948-1074014
Length
71 bp
Sequences
Splice sites
3' ss Seq
ACCTCGCTGGCCCTGCAGAGTGT
3' ss Score
-12.71
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CCTTCCATTATGAGAGCAACAATGATCTGGAGAAACAGGAGTTCGAGAAGGCCCTGGAGACGATTGCTGTGGCCTTCAGTAGCAC
Seq A exon
TGTCCGAGTTCCTCATGGGTGAAGTGGACAGCAGCACCCTCCTAGCAGTGCCTCCTGGGGACTCGAGCCAG
Seq C2 exon
TCCATGGAAAGCCTGTATGGACCGGGCAGTGAGGGCACGCCTCCCAGCCTGGAAGACTGTGACGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180448-'17-20,'17-19,18-20
Average complexity
S*
Mappability confidence:
88%=75=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.120 C2=0.826
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCATTATGAGAGCAACAATGA
R:
CGGCGTCACAGTCTTCCAG
Band lengths:
152-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development