GgaEX1028878 @ galGal4
Exon Skipping
Gene
ENSGALG00000002559 | HMHA1
Description
minor histocompatibility protein HA-1 [Source:RefSeq peptide;Acc:NP_001026108]
Coordinates
chr28:2844632-2845091:+
Coord C1 exon
chr28:2844632-2844716
Coord A exon
chr28:2844824-2844896
Coord C2 exon
chr28:2845013-2845091
Length
73 bp
Sequences
Splice sites
3' ss Seq
CTGTGCTCCTCTTGTCACAGCGT
3' ss Score
8.49
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCTTCCATTACGAATCCAACAATGAGACGGACAAGAGGGAGTTTGAGAAGGCGGTGGAGACCATCGCGGTGTCCTTCAGCAGCAC
Seq A exon
CGTCTCTGAGTTCCTCATGGGGGAGGTGGACAGCAGCACCATCCTCTCCATCCCACCCAGCGACCAGAACCAG
Seq C2 exon
TCTATGGAGAGCCTCTATGGGGGGATCCCTGGGCCTGGAGGGGATGGTGTGCCCTCGGGCATGGAGAGCTATGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002559-'5-4,'5-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=0.240 C2=0.852
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCATTACGAATCCAACAA
R:
TCATAGCTCTCCATGCCCGAG
Band lengths:
159-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]