MmuEX6049730 @ mm9
Exon Skipping
Gene
ENSMUSG00000035697 | Hmha1
Description
histocompatibility (minor) HA-1 [Source:MGI Symbol;Acc:MGI:1917969]
Coordinates
chr10:79483696-79484200:+
Coord C1 exon
chr10:79483696-79483780
Coord A exon
chr10:79483867-79483939
Coord C2 exon
chr10:79484134-79484200
Length
73 bp
Sequences
Splice sites
3' ss Seq
GACTCCCCCTGGCCCTGCAGTGT
3' ss Score
7.02
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CCTTTCATTATGAATGCAACAATGAATCAGATAAGAGGGAATTTGAGAAGGCTCTGGAAACCATTGCGGTGTCCTTCAGCTGCAC
Seq A exon
TGTGTCCGAGTTCCTTTTGGGTGAAGTGGACAGCAGTACTCTCCTGGCGGTGCCTCCGGGGGACCCCAGCCAG
Seq C2 exon
TCCATGGAGAACCTTTATGGGGCTGGCACGGAGGGGCCCCCACATAACGTGGAGGAATGTGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035697-'8-5,'8-4,9-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.957
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTCATTATGAATGCAACAATGAA
R:
CTTCTTCACATTCCTCCACGT
Band lengths:
152-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: