RnoEX6030585 @ rn6
Exon Skipping
Gene
ENSRNOG00000013220 | Arhgap45
Description
Rho GTPase activating protein 45 [Source:RGD Symbol;Acc:1308662]
Coordinates
chr7:12736796-12737308:-
Coord C1 exon
chr7:12737224-12737308
Coord A exon
chr7:12737065-12737137
Coord C2 exon
chr7:12736796-12736862
Length
73 bp
Sequences
Splice sites
3' ss Seq
TGACTCCCCTGGCCTTGCAGTGT
3' ss Score
8.49
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CCTTTCATTATGAATGCAACAATGAATCAGATAAGAGGGAGTTTGAGAAGGCACTGGAGACCATTGCTGTGTCCTTCAGCTGCAC
Seq A exon
TGTGTCGGAGTTCCTTTTGGGTGAAGTGGACAGCAGTACACTCCTGGCTGTGCCTCCGGGGGACCCTAGCCAG
Seq C2 exon
TTGGTGGAGAACCTTTATGGGTCAGGCAGTGAGGGGCCCCCACACAGCGTGGAGGATTGTGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013220-'11-6,'11-5,12-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.783
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTCATTATGAATGCAACAATGAA
R:
TTCTTCACAATCCTCCACGCTG
Band lengths:
151-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]